Quicksand's documentation
ΒΆ
Table of content
Pipeline
Workflow
Filtering
Metagenomics classification
Mapping and Deduplication
DNA Deamination Stats
Fixed References
Extract Ancient Sequences
Rerun
References
Quickstart
Requirements
Download the database
Download test-data
Run quicksand
Configuration
Config-file
Environmental variables
Intermediate files
Flags
Required flags
Optional flags
Profiles
Input and Output
Input
Output
Files
Examples
Regular run
Fixed references
Rerun
quicksand
Navigation
Pipeline
Quickstart
Configuration
Flags
Input and Output
Examples
Related Topics
Documentation overview
Next:
Pipeline
Quick search